Daniel B. McClatchy: search on Z-Library

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1

Nine quick tips for efficient bioinformatics curriculum development and training

McClatchy, Susan, Bass, Kristin M., Gatti, Daniel M., Moylan, Adam, Churchill, Gary, Schwartz, Russell

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 682 KB

2020

2

From Synapse to Function: A Perspective on the Role of Neuroproteomics in Elucidating Mechanisms of Drug Addiction

Natividad, Luis, Buczynski, Matthew, McClatchy, Daniel, Yates, John

Journal:

Year:

2018

File:

PDF, 2.21 MB

2018

3

Stable isotope labeling of mammals (SILAM) for in vivo quantitative proteomic analysis

Rauniyar, Navin, McClatchy, Daniel B., Yates, John R.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.26 MB

english, 2013

4

Temporal Quantitative Profiling of Newly Synthesized Proteins during AÎ² Accumulation

Ma, Yuanhui, McClatchy, Daniel B., MartÃnez-BartolomÃ©, Salvador, Bamberger, Casimir, Yates, John R.

Journal:

Journal of Proteome Research

Year:

2020

File:

PDF, 4.07 MB

2020

5

Characterization of Breast Cancer Interstitial Fluids by TmT Labeling, LTQ-Orbitrap Velos Mass Spectrometry, and Pathway Analysis

Raso, Cinzia, Cosentino, Carlo, Gaspari, Marco, Malara, Natalia, Han, Xuemei, McClatchy, Daniel, Park, Sung Kyu, Renne, Maria, Vadalà, Nuria, Prati, Ubaldo, Cuda, Giovanni, Mollace, Vincenzo, Amato, F

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.59 MB

english, 2012

6

Resolution of fine biological structure including small narcomedusae across a front in the Southern California Bight

McClatchie, Sam, Cowen, Robert, Nieto, Karen, Greer, Adam, Luo, Jessica Y., Guigand, Cedric, Demer, David, Griffith, David, Rudnick, Daniel

Journal:

Journal of Geophysical Research

Year:

2012

Language:

english

File:

PDF, 4.95 MB

english, 2012

7

S-Nitrosylation of PINK1 Attenuates PINK1/Parkin-Dependent Mitophagy in hiPSC-Based Parkinson’s Disease Models

Oh, Chang-Ki, Sultan, Abdullah, Platzer, Joseph, Dolatabadi, Nima, Soldner, Frank, McClatchy, Daniel B., Diedrich, Jolene K., Yates, John R., Ambasudhan, Rajesh, Nakamura, Tomohiro, Jaenisch, Rudolf,

Journal:

Year:

2017

Language:

english

File:

PDF, 3.69 MB

english, 2017

8

The dynamic relationship between mu and kappa opioid receptors in body temperature regulation

Xiaohong Chen, Daniel B. McClatchy, Ellen B. Geller, Ronald J. Tallarida, Martin W. Adler

Journal:

Year:

2005

Language:

english

File:

PDF, 131 KB

english, 2005

9

Elongation Factor 1A Family Regulates the Recycling of the M4 Muscarinic Acetylcholine Receptor

Daniel B. McClatchy, Guofu Fang, Allan I. Levey

Journal:

Neurochemical Research

Year:

2006

Language:

english

File:

PDF, 512 KB

english, 2006

10

Comparison of Protein Expression Ratios Observed by Sixplex and Duplex TMT Labeling Method

Rauniyar, Navin, Gao, Benbo, McClatchy, Daniel B., Yates, John R.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 950 KB

english, 2013

11

Shotgun Proteomics in Neuroscience

Lujian Liao, Daniel B. McClatchy, John R. Yates

Journal:

Year:

2009

Language:

english

File:

PDF, 748 KB

english, 2009

12

Acute Synthesis of CPEB Is Required for Plasticity of Visual Avoidance Behavior in Xenopus

Shen, Wanhua, Liu, Han-Hsuan, Schiapparelli, Lucio, McClatchy, Daniel, He, Hai-yan, Yates, John R., Cline, Hollis T.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.16 MB

english, 2014

13

Intracellular amyloid toxicity induces oxytosis/ferroptosis regulated cell death

Huang, Ling, McClatchy, Daniel B., Maher, Pamela, Liang, Zhibin, Diedrich, Jolene K., Soriano-Castell, David, Goldberg, Joshua, Shokhirev, Maxim, Yates, John R., Schubert, David, Currais, Antonio

Journal:

Cell Death and Disease

Year:

2020

File:

PDF, 2.18 MB

2020

14

Quantitative analysis of global protein stability rates in tissues

McClatchy, Daniel B., MartÃnez-BartolomÃ©, Salvador, Gao, Yu, LavallÃ©e-Adam, Mathieu, Yates, John R.

Journal:

Scientific Reports

Year:

2020

File:

PDF, 2.20 MB

2020

15

15 N Metabolic Labeling of Mammalian Tissue with Slow Protein Turnover

McClatchy, Daniel B., Dong, Meng-Qiu, Wu, Christine C., Venable, John D., Yates, John R.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 182 KB

english, 2007

16

Motif-Specific Sampling of Phosphoproteomes

Ruse, Cristian I., McClatchy, Daniel B., Lu, Bingwen, Cociorva, Daniel, Motoyama, Akira, Park, Sung Kyu, Yates, John R.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.43 MB

english, 2008

17

HILAQ: A Novel Strategy for Newly Synthesized Protein Quantification

Ma, Yuanhui, McClatchy, Daniel B., Barkallah, Salim, Wood, William W., Yates III, John R.

Journal:

Journal of Proteome Research

Year:

2017

Language:

english

File:

PDF, 1.53 MB

english, 2017

18

Impact of the identification strategy on the reproducibility of DDA and DIA results

Fernandez-Costa, Carolina, MartÃnez-BartolomÃ©, Salvador, McClatchy, Daniel B., Saviola, Anthony J., Yu, Nam-Kyung, Yates, John R.

Journal:

Journal of Proteome Research

Year:

2020

File:

PDF, 749 KB

2020

19

Exosomes regulate neurogenesis and circuit assembly

Sharma, Pranav, Mesci, Pinar, Carromeu, Cassiano, McClatchy, Daniel R., Schiapparelli, Lucio, Yates, John R., Muotri, Alysson R., Cline, Hollis T.

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 1.89 MB

2019

20

Possible mechanism of hypothermia induced by intracerebroventricular injection of orphanin FQ/nociceptin

Xiaohong Chen, Daniel B McClatchy, Ellen B Geller, Lee-Yuan Liu-Chen, Ronald J Tallarida, Martin W Adler

Journal:

Year:

2001

Language:

english

File:

PDF, 219 KB

english, 2001

21

Quantitative Analysis of Brain Nuclear Phosphoproteins Identifies Developmentally Regulated Phosphorylation Events

Liao, Lujian, McClatchy, Daniel B., Park, Sung Kyu, Xu, Tao, Lu, Bingwen, Yates, John R.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.19 MB

english, 2008

22

Quantitative temporal analysis of protein dynamics in cardiac remodeling

McClatchy, Daniel B., Ma, Yuanhui, Liem, David A., Ng, Dominic C.M., Ping, Peipei, Yates, John R.

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2018

Language:

english

File:

PDF, 2.08 MB

english, 2018

23

Proteomics INTegrator (PINT), an online tool to store, query, and visualize large proteomic experiment results

Martínez-Bartolomé, Salvador, Bamberger, Tom Casimir, Lavallée-Adam, Mathieu, McClatchy, Daniel B., Yates, John R.

Journal:

Journal of Proteome Research

Year:

2019

Language:

english

File:

PDF, 760 KB

english, 2019

24

Improving Proteomics Data Reproducibility with a Dual-Search Strategy

Fernandez-Costa, Carolina, Martínez-Bartolomé, Salvador, McClatchy, Daniel B., Yates, John R.

Journal:

Analytical Chemistry

Year:

2019

Language:

english

File:

PDF, 658 KB

english, 2019

25

Quantitative analysis of newly synthesized proteins

Ma, Yuanhui, McClatchy, Daniel B., Barkallah, Salim, Wood, William W., Yates, John R.

Journal:

Nature Protocols

Year:

2018

Language:

english

File:

PDF, 814 KB

english, 2018

26

Dynamics of Subcellular Proteomes During Brain Development

McClatchy, Daniel B., Liao, Lujian, Lee, Ji Hyoung, Park, Sung Kyu, Yates, John R.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.11 MB

english, 2012

27

Direct Detection of Biotinylated Proteins by Mass Spectrometry

Schiapparelli, Lucio Matias, McClatchy, Daniel B., Liu, Han-Hsuan, Sharma, Pranav, Yates, John R., Cline, Hollis T.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.48 MB

english, 2014

28

PSEA-Quant: A Protein Set Enrichment Analysis on Label-Free and Label-Based Protein Quantification Data

Lavallée-Adam, Mathieu, Rauniyar, Navin, McClatchy, Daniel B., Yates, John R.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.60 MB

english, 2014

29

Structural Analysis of Hippocampal Kinase Signal Transduction

McClatchy, Daniel B., Yu, Nam-Kyung, Martínez-Bartolomé, Salvador, Patel, Reesha, Pelletier, Alexander, Lavalle-Adam, Mathieu, Powell, Susan, Roberto, Marisa, Yates, John R.

Journal:

ACS Chemical Neuroscience

Year:

2018

Language:

english

File:

PDF, 1.57 MB

english, 2018

30

Relative Quantification of Stable Isotope Labeled Peptides Using a Linear Ion Trap-Orbitrap Hybrid Mass Spectrometer

Venable, John D., Wohlschlegel, James, McClatchy, Daniel B., Park, Sung Kyu, Yates, John R.

Journal:

Analytical Chemistry

Year:

2007

Language:

english

File:

PDF, 403 KB

english, 2007

31

Pulsed Azidohomoalanine Labeling in Mammals (PALM) detects changes in Liver-specific LKB1 knockout mice

McClatchy, Daniel B., Ma, Yuanhui, Liu, Chao, Stein, Benjamin D., Martínez-Bartolomé, Salvador, Vasquez, Debbie, Hellberg, Kristina, Shaw, Reuben J., Yates, John R.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.12 MB

english, 2015

32

Strategies for shotgun identification of integral membrane proteins by tandem mass spectrometry

Bingwen Lu, Daniel B. McClatchy, Jin Young Kim, John R. Yates III

Journal:

Year:

2008

Language:

english

File:

PDF, 250 KB

english, 2008

33

Amyloid Accumulation Drives Proteome-wide Alterations in Mouse Models of Alzheimer’s Disease-like Pathology

Savas, Jeffrey N., Wang, Yi-Zhi, DeNardo, Laura A., Martinez-Bartolome, Salvador, McClatchy, Daniel B., Hark, Timothy J., Shanks, Natalie F., Cozzolino, Kira A., Lavallée-Adam, Mathieu, Smukowski, Sam

Journal:

Year:

2017

Language:

english

File:

PDF, 5.76 MB

english, 2017

34

Comparisons of Mass Spectrometry Compatible Surfactants for Global Analysis of the Mammalian Brain Proteome

Chen, Emily I., McClatchy, Daniel, Park, Sung Kyu, Yates III, John R.

Journal:

Analytical Chemistry

Year:

2008

Language:

english

File:

PDF, 613 KB

english, 2008

35

The Retinal Ganglion Cell Transportome Identifies Proteins Transported to Axons and Presynaptic Compartments in the Visual System In Vivo

Schiapparelli, Lucio M., Shah, Sahil H., Ma, Yuanhui, McClatchy, Daniel B., Sharma, Pranav, Li, Jianli, Yates, John R., Goldberg, Jeffrey L., Cline, Hollis T.

Journal:

Year:

2019

File:

PDF, 5.02 MB

2019

36

Role of the visual experience-dependent nascent proteome in neuronal plasticity

Liu, Han-Hsuan, McClatchy, Daniel B, Schiapparelli, Lucio, Shen, Wanhua, Yates, John R, Cline, Hollis T

Journal:

Year:

2018

Language:

english

File:

PDF, 3.20 MB

english, 2018

37

Improving Proteomics Data Reproducibility with a Dual-Search Strategy

Fernandez-Costa, Carolina, Martínez-Bartolomé, Salvador, McClatchy, Daniel B., Yates, John R.

Journal:

Analytical Chemistry

Year:

2019

File:

PDF, 658 KB

2019

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